EX Holon Phantoms was released on May 3, 2006 and has a total of 111 cards (110 regular/1 secret) in the set.
| Num | Name | Type | HP | Rarity | |
|---|---|---|---|---|---|
| 1 | Armaldo δ | Pokémon - Stage 2 | 110 | Rare Holo | |
| 2 | Cradily δ | Pokémon - Stage 2 | 100 | Rare Holo | |
| 3 | Deoxys δ Attack Forme | Pokémon - Basic | 70 | Rare Holo | |
| 4 | Deoxys δ Defense Forme | Pokémon - Basic | 80 | Rare Holo | |
| 5 | Deoxys δ Normal Forme | Pokémon - Basic | 70 | Rare Holo | |
| 6 | Deoxys δ Speed Forme | Pokémon - Basic | 60 | Rare Holo | |
| 7 | Flygon δ | Pokémon - Stage 2 | 110 | Rare Holo | |
| 8 | Gyarados δ | Pokémon - Stage 1 | 90 | Rare Holo | |
| 9 | Kabutops δ | Pokémon - Stage 2 | 100 | Rare Holo | |
| 10 | Kingdra δ | Pokémon - Stage 2 | 110 | Rare Holo | |
| 11 | Latias δ | Pokémon - Basic | 70 | Rare Holo | |
| 12 | Latios δ | Pokémon - Basic | 80 | Rare Holo | |
| 13 | Omastar δ | Pokémon - Stage 2 | 110 | Rare Holo | |
| 14 | Pidgeot δ | Pokémon - Stage 2 | 100 | Rare Holo | |
| 15 | Raichu δ | Pokémon - Stage 1 | 70 | Rare Holo | |
| 16 | Rayquaza δ | Pokémon - Basic | 80 | Rare Holo | |
| 17 | Vileplume δ | Pokémon - Stage 2 | 90 | Rare Holo | |
| 18 | Absol | Pokémon - Basic | 70 | Rare | |
| 19 | Bellossom δ | Pokémon - Stage 2 | 100 | Rare | |
| 20 | Blaziken | Pokémon - Stage 2 | 100 | Rare | |
| 21 | Latias δ | Pokémon - Basic | 70 | Rare | |
| 22 | Latios δ | Pokémon - Basic | 80 | Rare | |
| 23 | Mawile | Pokémon - Basic | 60 | Rare | |
| 24 | Mewtwo δ | Pokémon - Basic | 70 | Rare | |
| 25 | Nosepass | Pokémon - Basic | 60 | Rare | |
| 26 | Rayquaza δ | Pokémon - Basic | 80 | Rare | |
| 27 | Regice | Pokémon - Basic | 80 | Rare | |
| 28 | Regirock | Pokémon - Basic | 80 | Rare | |
| 29 | Registeel | Pokémon - Basic | 80 | Rare | |
| 30 | Relicanth | Pokémon - Basic | 70 | Rare | |
| 31 | Sableye | Pokémon - Basic | 60 | Rare | |
| 32 | Seviper | Pokémon - Basic | 70 | Rare | |
| 33 | Torkoal | Pokémon - Basic | 80 | Rare | |
| 34 | Zangoose | Pokémon - Basic | 70 | Rare | |
| 35 | Aerodactyl δ | Pokémon - Stage 1 | 70 | Uncommon | |
| 36 | Camerupt | Pokémon - Stage 1 | 90 | Uncommon | |
| 37 | Chimecho δ | Pokémon - Basic | 60 | Uncommon | |
| 38 | Claydol | Pokémon - Stage 1 | 80 | Uncommon | |
| 39 | Combusken | Pokémon - Stage 1 | 70 | Uncommon | |
| 40 | Donphan | Pokémon - Stage 1 | 80 | Uncommon | |
| 41 | Exeggutor δ | Pokémon - Stage 1 | 80 | Uncommon | |
| 42 | Gloom δ | Pokémon - Stage 1 | 70 | Uncommon | |
| 43 | Golduck δ | Pokémon - Stage 1 | 70 | Uncommon | |
| 44 | Holon's Castform | Pokémon - Basic | 50 | Uncommon | |
| 45 | Lairon | Pokémon - Stage 1 | 80 | Uncommon | |
| 46 | Manectric | Pokémon - Stage 1 | 80 | Uncommon | |
| 47 | Masquerain | Pokémon - Stage 1 | 70 | Uncommon | |
| 48 | Persian δ | Pokémon - Stage 1 | 70 | Uncommon | |
| 49 | Pidgeotto δ | Pokémon - Stage 1 | 70 | Uncommon | |
| 50 | Primeape δ | Pokémon - Stage 1 | 70 | Uncommon | |
| 51 | Raichu | Pokémon - Stage 1 | 80 | Uncommon | |
| 52 | Seadra δ | Pokémon - Stage 1 | 70 | Uncommon | |
| 53 | Sharpedo δ | Pokémon - Stage 1 | 70 | Uncommon | |
| 54 | Vibrava δ | Pokémon - Stage 1 | 80 | Uncommon | |
| 55 | Whiscash | Pokémon - Stage 1 | 80 | Uncommon | |
| 56 | Wobbuffet | Pokémon - Basic | 70 | Uncommon | |
| 57 | Anorith δ | Pokémon - Stage 1 | 70 | Common | |
| 58 | Aron | Pokémon - Basic | 40 | Common | |
| 59 | Baltoy | Pokémon - Basic | 50 | Common | |
| 60 | Barboach | Pokémon - Basic | 50 | Common | |
| 61 | Carvanha δ | Pokémon - Basic | 40 | Common | |
| 62 | Corphish | Pokémon - Basic | 50 | Common | |
| 63 | Corphish | Pokémon - Basic | 40 | Common | |
| 64 | Electrike | Pokémon - Basic | 40 | Common | |
| 65 | Exeggcute δ | Pokémon - Basic | 50 | Common | |
| 66 | Horsea δ | Pokémon - Basic | 50 | Common | |
| 67 | Kabuto δ | Pokémon - Stage 1 | 70 | Common | |
| 68 | Lileep δ | Pokémon - Stage 1 | 80 | Common | |
| 69 | Magikarp δ | Pokémon - Basic | 30 | Common | |
| 70 | Mankey δ | Pokémon - Basic | 50 | Common | |
| 71 | Meowth δ | Pokémon - Basic | 50 | Common | |
| 72 | Numel | Pokémon - Basic | 50 | Common | |
| 73 | Oddish δ | Pokémon - Basic | 40 | Common | |
| 74 | Omanyte δ | Pokémon - Stage 1 | 70 | Common | |
| 75 | Phanpy | Pokémon - Basic | 50 | Common | |
| 76 | Pichu δ | Pokémon - Basic | 50 | Common | |
| 77 | Pidgey δ | Pokémon - Basic | 40 | Common | |
| 78 | Pikachu | Pokémon - Basic | 50 | Common | |
| 79 | Pikachu δ | Pokémon - Basic | 50 | Common | |
| 80 | Poochyena | Pokémon - Basic | 40 | Common | |
| 81 | Psyduck δ | Pokémon - Basic | 50 | Common | |
| 82 | Surskit | Pokémon - Basic | 40 | Common | |
| 83 | Torchic | Pokémon - Basic | 40 | Common | |
| 84 | Trapinch δ | Pokémon - Basic | 50 | Common | |
| 85 | Holon Adventurer | Trainer - Supporter | Uncommon | ||
| 86 | Holon Fossil | Trainer - Item | Uncommon | ||
| 87 | Holon Lake | Trainer - Stadium | Uncommon | ||
| 88 | Mr. Stone's Project | Trainer - Supporter | Uncommon | ||
| 89 | Professor Cozmo's Discovery | Trainer - Supporter | Uncommon | ||
| 90 | Rare Candy | Trainer - Item | Uncommon | ||
| 91 | Claw Fossil | Trainer - Item | 40 | Common | |
| 92 | Mysterious Fossil | Trainer - Item | 50 | Common | |
| 93 | Root Fossil | Trainer - Item | 40 | Common | |
| 94 | Darkness Energy | Energy - Special | Rare | ||
| 95 | Metal Energy | Energy - Special | Rare | ||
| 96 | Multi Energy | Energy - Special | Rare | ||
| 97 | Dark Metal Energy | Energy - Special | Uncommon | ||
| 98 | δ Rainbow Energy | Energy - Special | Uncommon | ||
| 99 | Crawdaunt ex | Pokémon - Stage 1 | 110 | Rare Holo ex | |
| 100 | Mew ex | Pokémon - Basic | 90 | Rare Holo ex | |
| 101 | Mightyena ex | Pokémon - Stage 1 | 100 | Rare Holo ex | |
| 102 | Gyarados ☆ δ | Pokémon - Basic | 80 | Rare Holo Star | |
| 103 | Mewtwo ☆ | Pokémon - Basic | 80 | Rare Holo Star | |
| 104 | Pikachu ☆ | Pokémon - Basic | 60 | Rare Holo Star | |
| 105 | Grass Energy | Energy - Basic | Rare Holo | ||
| 106 | Fire Energy | Energy - Basic | Rare Holo | ||
| 107 | Water Energy | Energy - Basic | Rare Holo | ||
| 108 | Lightning Energy | Energy - Basic | Rare Holo | ||
| 109 | Psychic Energy | Energy - Basic | Rare Holo | ||
| 110 | Fighting Energy | Energy - Basic | Rare Holo | ||
| 111 | Mew | Pokémon - Basic | 50 | Rare Secret |